Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 17
Release date: Jul 8 2014
Last update date: Oct 17 2018
Access: Public
Genes: CTCF
Taxon: Homo sapiens, Mus musculus
Dataset link High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm

Experimental Protocol


We use Micrococcal Nuclease (MNase) to map chromatin structure in mouse ES cells and sperm. Specifically, we generate paired-end deep-sequencing libraries that are able to distinguish DNA digestion products by size, thus allowing us to simultaneously map nucleosomes as well as other DNA-binding proteins such as transcription factors.

Repositories


GEO

GSE58101

ArrayExpress

E-GEOD-58101

ENA

SRP042377

BioProject

PRJNA248901

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Contact


Benjamin Carone
Benjamin R Carone