Dataset features

Specifications


Application: SNP array data analysis, aCGH data analysis
Number of samples: 475
Release date: May 20 2015
Last update date: Mar 7 2017
Access: Public
Genes: IKZF2, MYLK, SOX5, VSNL1, ZPAX
Taxon: Homo sapiens, Gallus gallus, Cucumber necrosis virus
Dataset link Detection of genome-wide copy number variations in two chicken lines divergently selected for abdominal fat content

Experimental Protocol


In total, 475 birds (203 and 272 individuals from the lean and fat lines, respectively) from the 11th generation population of Northeast Agricultural University broiler lines divergently selected for abdominal fat content (NEAUHLF) were used. These 475 birds were genotyped by the chicken 60k SNP chip and PennCNV method were used to perform genome-wide CNV detection.

Repositories


GEO

GSE58551

ArrayExpress

E-GEOD-58551

BioProject

PRJNA252858

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Contact


Hui Zhang

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 (2)