5C-seq analysis steps

For larger-scale applications, chromosome conformation capture carbon copy (5C) combines 3C with ligation-mediated amplification (LMA) to simultaneously quantify hundreds of thousands of physical DNA contacts by microarray or ultra-high-throughput DNA sequencing. 5C allows the…

Chromosome conformation capture carbon copy analysis bioinformatics software tools

Desktop app
G T A T C G C T A HiTC HiTC

HiTC

The package was developed to explore high-throughput 'C' data such as…

The package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

Web app
G T A T C G C T A WashU Epigenome… WashU Epigenome Browser

WashU Epigenome Browser

A genome browser focusing on the human epigenome. The Browser is web-based and…

A genome browser focusing on the human epigenome. The Browser is web-based and it extends the seminal concept invented by the UCSC Cancer Genomics Browser to support large, sequencing-based datasets.…

Desktop app
Web app
G T A T C G C T A HiFive HiFive

HiFive

A set of tools for handling HiC and 5C data. HiFive provides efficient data…

A set of tools for handling HiC and 5C data. HiFive provides efficient data handling and a variety of normalization approaches for easy, fast analysis and method comparison. Integration of MPI-based…

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