5C-seq analysis steps

For larger-scale applications, chromosome conformation capture carbon copy (5C) combines 3C with ligation-mediated amplification (LMA) to simultaneously quantify hundreds of thousands of physical DNA contacts by microarray or ultra-high-throughput DNA sequencing. 5C allows the…

Chromosome conformation capture carbon copy analysis bioinformatics software tools

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HiTC
Desktop

HiTC

The package was developed to explore high-throughput 'C' data such as…

The package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

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WashU…
Web

WashU Epigenome Browser

A genome browser focusing on the human epigenome. The Browser is web-based and…

A genome browser focusing on the human epigenome. The Browser is web-based and it extends the seminal concept invented by the UCSC Cancer Genomics Browser to support large, sequencing-based datasets.…

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my5C
Web

my5C

Provides an online 5C tool for the rapid design of 5C primers. my5C allows…

Provides an online 5C tool for the rapid design of 5C primers. my5C allows complete control over extremely complex 5C design schemes. This tool is composed of two modules. The “my5C.primers”…

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HiFive
Desktop
Web

HiFive

A set of tools for handling HiC and 5C data. HiFive provides efficient data…

A set of tools for handling HiC and 5C data. HiFive provides efficient data handling and a variety of normalization approaches for easy, fast analysis and method comparison. Integration of MPI-based…

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