Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 4
Release date: Jan 1 2017
Last update date: Apr 3 2017
Access: Public
Computational protocol: FastQC, Bowtie, TopHat, Cufflinks, QualiMap, GEO
Dataset link Tissue-specific signatures in the transcriptional response to Anaplasma phagocytophilum infection of Ixodes scapularis and Ixodes ricinus tick cell lines

Experimental Protocol


Comparison of differential gene expression in infected tick cell lines (Ixodes scapularis [ISE6] and Ixodes ricinus [IRE/CTVM20]) at 7 days post-infection. Differential gene expression determined through comparison with mock-treated (uninfected) cells. This series contains only Ixodes ricinus data.

Repositories


GEO

GSE76906

ENA

SRP068499

BioProject

PRJNA308910

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