Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 4
Release date: Dec 18 2008
Last update date: Sep 28 2018
Access: Public
Dataset link Mapping Novel Chromatin Regions Using Sono-Seq

Experimental Protocol


For this analysis, seven samples from HeLa S3 cells were included: RNA Polymerase II (GEO accession GSM320734), Sono-Seq/Input DNA (small fragments) that was size selected at 100-350 bp (GEO accession GSM320735), Sono-Seq/Input DNA (large fragments) size selected between 350-800 bp, naked DNA, normal mouse IgG, Sono-Seq/Input DNA stimulated with interferon-gamma (GEO accession GSM320737), and MNase-digested DNA. Two replicates were used for MNase-digested DNA and Sono-Seq/Input DNA (large fragments) whereas three replicates were used for all other samples. Naked DNA was used as a reference for scoring peaks.

Repositories


GEO

GSE14022

ArrayExpress

E-GEOD-14022

ENA

SRP001365

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