Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis, ChIP-seq analysis
Number of samples: 35
Release date: Oct 2 2012
Last update date: Oct 18 2018
Access: Public
Diseases: Neoplasms, Prostatic Neoplasms
Chemicals: Androgens
Computational protocol: TopHat, HTSeq, edgeR, GOstats, MetaCore, GeneSigDB
Dataset link Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions

Experimental Protocol


LNCaP, C4-2B, or 22RV1 cells were cultured in hormone-free media for 3 days and then treated with ethanol vehicle or DHT (10nM) for 4h or 16h prior to ChIP-seq or RNA-seq assays. For siRNA transfection, cells were transfected with AR siRNA or control siRNA for 3 days prior to RNA-seq assays.

Repositories


GEO

GSE40050

ArrayExpress

E-GEOD-40050

ENA

SRP014809

BioProject

PRJNA172760

Download


Contact


Keith Decker
Keith F Decker

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