Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 9
Release date: Sep 5 2017
Last update date: Nov 21 2018
Access: Public
Dataset link Analysis of non-methylated islands, sites of accessible chromatin and nascent transcriptome in C127 mouse cell line. [C127_BioCAP-ATAC-4sU]

Experimental Protocol


C127 mouse cell line was employed to determine (i) genomic regions enriched for non-methylated DNA using BioCAP assay, (ii) genomic regions of accessible chromatin using ATAC-seq, (iii) nascent transcriptome using an in vivo pulse labelling with 4-thiouridine (4sU) followed by massively parallel sequencing (4sU-seq).

Repositories


GEO

GSE93427

ENA

SRP096760

BioProject

PRJNA361190

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Contact


Vincenzo Di Cerbo

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