Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 35
Release date: Jan 1 2012
Last update date: Nov 9 2017
Access: Public
Diseases: Paraparesis, Tropical Spastic, HIV Infections
Dataset link Genome-wide analysis of gene expression profiles in individuals infected with the Human T-Lymphotropic virus Type 1 (HTLV-1) - test set

Experimental Protocol


Patients attending the HTLV-1 clinic at St Mary’s hospital in London, UK were classified according to their clinical status as asymptomatic HTLV-1 carriers (ACs, n=17), patients with HTLV-1-associated meylopathy (HAM, n=10) or uninfected control subjects (n=8). Three ml of blood were drawn into a Tempus tube (Applied Biosystems, Foster City, CA, USA). Total RNA was extracted, globin mRNA depleted and following cRNA generation samples were analysed on HUmanWG6 v3 Illumina BeadChip arrays.

Repositories


GEO

GSE29332

ArrayExpress

E-GEOD-29332

BioProject

PRJNA142809

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Contact


Charles Bangham
Charles R. M. Bangham

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