Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 8
Release date: Sep 1 2017
Last update date: Sep 2 2017
Access: Public
Diseases: Nystagmus, Pathologic
Chemicals: Amino Acids
Mutations: p|SUB|G|2600|D
Dataset link Transcriptome Profiling in Mycobacterium leprae. Implications for Type 2 Reactions (ENL) in Leprosy

Experimental Protocol


Post clinical examination, excisional skin biopsy specimens were collected from skin lesions of subjects with and without type 2 reaction. Total RNA was extracted following the Trizol protocol and bacterial RNA was enriched in the samples. A 2 x 400K gene expression array (whole genome tiling array) was designed with the probes having 60-mer oligonucleotides tiling every 10bp of the genome sequence of M. leprae (NC_011896.1).

Repositories


GEO

GSE85948

BioProject

PRJNA339815

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Contact


Sundeep Vedithi