Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 52
Release date: May 16 2016
Last update date: Jul 13 2016
Access: Public
Chemicals: Cysteine
Dataset link Transcriptional reprogramming underpins enhanced plant growth promotion by the biocontrol fungus Trichoderma hamatum GD12 during antagonistic interactions with Sclerotinia sclerotiorum in soil

Experimental Protocol


RNA extracted directly from soil containing lettuce seedlings with either Trichoderma hamatum GD12 alone, T.hamatum GD12 and Sclerotinia sclerotiorum, or S. sclerotiorum alone. RNA was extracted in triplicate at days one, two, four, seven, ten and fifteen and then sequenced using an Illumina HiSeq2500. Two samples were taken in duplicate due to issues with RNA extraction.

Repositories


GEO

GSE67909

ENA

SRP057207

BioProject

PRJNA281244

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Contact


Sophie Shaw