Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 2
Release date: Mar 23 2017
Last update date: Jul 13 2018
Access: Public
Taxon: Homo sapiens, Cucumber necrosis virus
Dataset link Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [AffymetrixCytoScanHD]

Experimental Protocol


We systematically compared the genome-wide CNV detection power of all 17 available array designs from the Affymetrix, Agilent, and Illumina platforms by hybridizing the well-characterized genome of 1000 Genomes Project subject NA12878 to all arrays in two technical replicates, and performing data analysis using both manufacturer-recommended and platform-independent software. We benchmarked the resulting CNV call sets from each array using a gold standard set of CNVs for this genome derived from 1000 Genomes Project whole genome sequencing data.

Repositories


GEO

GSE96897

BioProject

PRJNA380055

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Contact


Rajini Haraksingh