Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 50
Release date: Nov 13 2018
Last update date: Nov 29 2018
Access: Public
Diseases: Adenocarcinoma, Brain Neoplasms, Ductus Arteriosus, Patent, Neoplasms
Genes: TP63
Taxon: Homo sapiens
Dataset link TP63-mediated enhancer reprogramming drives the squamous subtype of pancreatic ductal adenocarcinoma (ChIP-seq)

Experimental Protocol


H3K27ac ChIP-seq was performed using antibody recognizing endogenous protein with input genomic DNA as control with/without transduction of sgNEG/sgTP63#2/sgTP63#4 (BxPC3 cells) or MTV/TP63ΔN (SUIT2 cells). TP63 ChIP-seq in BxPC3 cells was performed using antibody recognizing endogenous protein with input genomic DNA as control. FLAG-TP63 ChIP-seq in SUIT2 cells was performed in FLAG-TP63 expressing cells with input genomic DNA as control.

Repositories


GEO

GSE115461

ENA

SRP149984

BioProject

PRJNA475111

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Contact


Tim Somerville