Computational protocol: Cell wall precursors are required to organize the chlamydial division septum

Similar protocols

Protocol publication

[…] Identity values were obtained using BLASTP version 2.2.25 with an expectation value threshold of 0.1. If necessary, the average identity of multiple High-Scoring segment Pair (HSP) was weighted according to the length of each HSP. Protein sequences were aligned using Tcoffee. The computational analyses were performed at the Vital-IT ( http://www.vital-it.ch) Center for high-performance computing of the Swiss Institute of Bioinformatics (SIB). Amphipathic helixes prediction was done using the online program Amphipaseek ( http://npsa-pbil.ibcp.fr/). Topology and transmembrane domain prediction was performed using the online program TMHMM Server ( http://www.cbs.dtu.dk/services/TMHMM/) […]

Pipeline specifications

Software tools BLASTP, T-Coffee, AmphipaSeek, TMHMM
Application Membrane protein analysis
Organisms Waddlia chondrophila, Homo sapiens
Diseases Abortion, Spontaneous, Chlamydia Infections