Computational protocol: Cell wall precursors are required to organize the chlamydial division septum

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Protocol publication

[…] Identity values were obtained using BLASTP version 2.2.25 with an expectation value threshold of 0.1. If necessary, the average identity of multiple High-Scoring segment Pair (HSP) was weighted according to the length of each HSP. Protein sequences were aligned using Tcoffee. The computational analyses were performed at the Vital-IT ( Center for high-performance computing of the Swiss Institute of Bioinformatics (SIB). Amphipathic helixes prediction was done using the online program Amphipaseek ( Topology and transmembrane domain prediction was performed using the online program TMHMM Server ( […]

Pipeline specifications

Software tools BLASTP, T-Coffee, AmphipaSeek, TMHMM
Application Membrane protein analysis
Organisms Waddlia chondrophila, Homo sapiens
Diseases Abortion, Spontaneous, Chlamydia Infections