Dataset features

Specifications


Application: BS-seq analysis, ChIP-seq analysis
Number of samples: 4
Release date: Jun 25 2013
Last update date: Jun 20 2017
Access: Public
Dataset link Functional centromere lost centromeric specific sequences but gain new sequences from nearby chromosomal arm.

Experimental Protocol


ChIP-seq was carried out with anti-CENH3 antibodies using material from young seedlings with and without sDic-15 chromosome. For sDic-15, some ChIPed DNA was treated with sodium bisulfite and prepared for Illumina sequencing to test its methylation level.

Repositories


GEO

GSE43140

ArrayExpress

E-GEOD-43140

ENA

SRP017676

BioProject

PRJNA184710

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Contact


Junling Pang
Pang Junling