Computational protocol: A Substrate-Fusion Protein Is Trapped inside the Type III Secretion System Channel in Shigella flexneri

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Protocol publication

[…] Coordinates for gold labels and needle complex centers from 50 iEM images were manually obtained using the ImageJ analysis package . The values were processed by R and subjected to a nearest-neighbor analysis with the Biobase package . […]

Pipeline specifications

Software tools ImageJ, Biobase
Applications Miscellaneous, Microscopic phenotype analysis
Organisms Shigella flexneri