Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 12
Release date: Apr 4 2007
Last update date: Mar 16 2012
Access: Public
Diseases: Neoplasms, Tumor Lysis Syndrome, Carcinoma, Lewis Lung
Dataset link Profiling of genes regulated by TGF-beta in lung carcinoma (A549) and immortalized lung epithelial (HPL1D)cells.

Experimental Protocol


To compare the genes regulated by TGF-beta in non transformed and transformed cells, we chose an immortalized lung epithelial cell line, HPL1D and a lung adenocarcinoma cell line, A549. Cells were plated and propagated in designated media and TGF-beta treatments were carried out in serum free conditions at various time intervals, 1hr, 4hr and 12hr. The RNA was extracted and expression profiling was performed using microarray experiments on 19K cDNA arrays after labeling the cDNAs with Cy3 and Cy5 dyes for normal and tumor cell RNAs respectively. The image and data analysis was performed using Quantarray (P.E. Life Sciences, USA) and Avadis (Strand Life Sci. India) softwares. The results are computed as log2 transformed fold changes between treated and untreated respective cell lines. The data of regulated genes of each cell line was compared with the other cell line and exclusively and commonly regulated genes have been determined.

Repositories


GEO

GSE7436

BioProject

PRJNA97963

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Contact


Paturu Kondaiah

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