Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 29
Release date: Oct 18 2017
Last update date: Aug 13 2018
Access: Public
Diseases: Glioblastoma, Neoplasms
Mutations: p|SUB|G|34|W
Computational protocol: limma, GSEA, Trimmomatic, TopHat, Cufflinks, rMATS, spliceR
Dataset link The histone variant H3.3 G34W substitution in giant cell tumor of the bone link chromatin and RNA processing

Experimental Protocol


We performed gene expression microarray on 29 samples, of which 27 were GCTB and 2 were control cell lines (mesenchymal stem cell line KM1234 and the hFOB1.19 osteoblast cell line). Collectively, 19 samples were H3.3G34W and 10 were H3.3WT. The samples were run on a HumanHT-12 v4 Expression BeadChip (Illumina).

Repositories


GEO

GSE102193

BioProject

PRJNA396955

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Contact


Jinyeong Lim

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