Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 16
Release date: Dec 23 2012
Last update date: Jul 19 2013
Access: Public
Taxon: Bos taurus, Capra hircus
Dataset link Transcriptome sequencing of Capra hircus for different tissues.

Experimental Protocol


We have sequenced a 3-year-old female Yunnan black goat and constructed a reference sequence for this breed. In order to improve quality of gene models, RNA samples of ten tissues (Bladder, Brain, Heart, Kidney, Liver, Lung, Lymph, Muscle, Ovarian, Spleen) were extracted from the same goat which was sequenced. To investigate the genic basis underlying the development of cashmere fibers using the goat reference genome assembly and annotated genes, we extracted RNA samples of primary hair follicle and secondary hair follicle from three Inner Mongolia cashmere goats and conducted transcriptome sequencing and DGE analysis. Ten RNA pools were created corresponding to different tissues of a 3-year-old female Yunnan Black goat. Secondary hair folicle and primary hair folicle were compared with 3 dulicated sample paires from three different Inner Mongolia cashmere goat individules. This submission represents RNA-Seq component of study.

Repositories


GEO

GSE37456

ArrayExpress

E-GEOD-37456

ENA

SRP012378

BioProject

PRJNA160149

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Contact


Zhijun Zheng