Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 7
Release date: Aug 31 2018
Last update date: Sep 1 2018
Access: Public
Diseases: Migraine Disorders
Dataset link Comparison of variant calling pipelines using Illumina CanineHD BeadChip array as the truth dataset

Experimental Protocol


We whole genome sequenced and genotyped using the Illumina CanineHD BeadChip array 12 individual samples. After quality control, we used Illumina CanineHD BeadChip array genotypes as the truth dataset and measured concordance rates between variant calling pipelines to the truth dataset. This series contains only the 'truth' BeadChip dataset. The whole genome sequence project is available in BioProject: PRJNA477886.

Repositories


GEO

GSE117010

BioProject

PRJNA480852

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Contact


Claire Wade