Computational protocol: Tracking a refined eIF4E-binding motif reveals Angel1 as a new partner of eIF4E

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Protocol publication

[…] The original alignment produced by T-Coffee ()/M-Coffee () on 970 sites was optimized using trimAl (). PhyML () was used to reconstruct a maximum likelihood (ML) phylogenetic tree (performed with the LG substitution model (), 1000 bootstraps and 4 substitution rate categories). Sequences used are detailed in Supplementary Methods. […]

Pipeline specifications