Dataset features

Specifications


Application: Hi-C analysis
Number of samples: 4
Release date: May 23 2017
Last update date: Oct 2 2018
Access: Public
Diseases: Breast Neoplasms, Graft vs Host Disease, Neoplasms
Dataset link Chromatin structure and CTCF across the MCF10 breast cancer progression series (HiC)

Experimental Protocol


HiC ------------------------ title: MCF10A Hi-C GSM1631184 source name: mammary gland/breast epithelial cell characteristics: cell type: basal epithelial, non-tumorigenic characteristics: neoplasia type: fibrocystic disease characteristics: ATCC ID: ATCC CRL-10317 description: reanalysis of GSM1631184/SRR1909069 processed data file: MCF10A_pooled_40000_iced.matrix.gz processed data file: HiCPro_40000_matrix_coordinates.bed processed data file: MCF10A_pooled.allValidPairs.hic

Repositories


GEO

GSE98552

ENA

SRP106470

BioProject

PRJNA385494

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Contact


Joe Boyd