Dataset features

Specifications


Dataset type: Genome variation profiling by array
Number of samples: 1
Release date: Dec 31 2018
Last update date: Jan 1 2019
Access: Public
Dataset link Identified amplification regions by high-density array CGH in a human colorectal adenocarcinoma cell line NCI-H716 [400K]

Experimental Protocol


Oligonucleotide-based Human Genome Microarrays (Agilent Technologies) containing 60K, 180K, 400K and 1M features were used for hybridization, among which 2×400K format was used to examine genome-wide copy number alteration in a human colorectal adenocarcinoma cell line NCI-H716. The 4×180K format targeting amplified regions was customized microarray that we created by using the Agilent eArray online system (https://earray.chem.agilent.com/‎) for interrogating the genome of DMs with high-resolution and accuracy.

Repositories


GEO

GSE110069

BioProject

PRJNA432777

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Contact


Xueyuan Jia