Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 4
Release date: Sep 16 2013
Last update date: Sep 25 2018
Access: Public
Diseases: Bacterial Infections, Cystic Fibrosis
Computational protocol: FastQC, Bowtie2, TopHat, Picard, HTSeq, DESeq, GEO
Dataset link In search of epigenetic marks in testes and sperm cells of differentially fed boars [RNA-Seq]

Experimental Protocol


Gene expression in sperm cells from differentially fed F0 boars was measured. F0 boars received either a standard diet or a standard diet supplemented with methylating micronutrients. These boars were used to study transgenerational epigenetic inheritance in a three generation pig pedigree. Therefore it was of interest if the diet affects gene expression in sperm cells which could then be transmitted to next generations.

Repositories


GEO

GSE48777

ArrayExpress

E-GEOD-48777

ENA

SRP027011

BioProject

PRJNA211619

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Contact


Martin Braunschweig
Martin H Braunschweig

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