Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Apr 4 2015
Last update date: Apr 4 2015
Access: Public
Genes: FGF9, HSPA4
Computational protocol: Bowtie2, edgeR
Dataset link GAGA Factor maintains promoters in nucleosome-free conformation and allows promoter-proximal pausing [GRO-seq]

Experimental Protocol


Two biological replicates of nascent RNA sequencing using GROseq to map transcriptionally-engaged RNA polymerases in untreated, LacZ-RNAi (control), and GAGA factor-RNAi.

Repositories


GEO

GSE58955

ENA

SRP043988

BioProject

PRJNA253984

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Contact


Nicholas Fuda

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