Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 10
Release date: Sep 14 2017
Last update date: Jan 24 2018
Access: Public
Taxon: Aspergillus niger, Guizotia abyssinica, Saccharomyces cerevisiae, Scheffersomyces stipitis
Computational protocol: BWA, RSEM, Primer Express, GEO
Dataset link In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR

Experimental Protocol


This study aim to characterize in vivo the genes involved in the rhamnose metabolism and the regulator in Aspergillus niger by studing the gene expression values of the mutants and the reference strains. Mutant strains of the putative rhamnose metabolic and regulatory genes (lraA, lraB, lraC, rhaR) and reference strain were grown on L-rhamnose. Samples were taken after 2 hours of incubation.

Repositories


GEO

GSE99865

ENA

SRP108888

BioProject

PRJNA389802

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Contact


Ronald de Vries

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