Computational protocol: Astrovirus MLB1 Is Not Associated with Diarrhea in a Cohort of Indian Children

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Protocol publication

[…] Sequences of the capsid region amplicons from HAstV and MLB1 positive samples were aligned using ClustalX1.83. PAUP was then used to generate maximum parsimony trees with 1,000 bootstrap replicates. […]

Pipeline specifications

Software tools Clustal W, PAUP*
Application Phylogenetics
Organisms Astrovirus MLB1, Homo sapiens