Dataset features

Specifications


Dataset type: SNP genotyping by SNP array, genotyping by array, Variation
Number of samples: 21
Release date: Jul 8 2014
Last update date: Jul 14 2014
Access: Public
Taxon: Homo sapiens
Dataset link Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [SNP array]

Experimental Protocol


16 matched samples, two IVF-ESCs, five sendai produced iPSC lines, two retro-virus produced iPSC lines, four NT-ESCs, the parental fibroblast line, and the sperm and oocyte donor were genotyped using the Illumina Omni5, which interrogates 4.3 million SNPs across the human genome. Additionally, matched samples from a patient with Leigh syndrome, a NT-ESC line, three iPSC lines, and the parental fibroblast line were genotyped using the Illumina Omni5.

Repositories


GEO

GSE53141

ArrayExpress

E-GEOD-53141

BioProject

PRJNA230975

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Contact


Robert Morey
Robert E Morey