Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 30
Release date: Jan 10 2013
Last update date: Oct 16 2017
Access: Public
Taxon: Saccharomyces cerevisiae
Dataset link Saccharomyces cerevisiae 3' poly(A) site mapping

Experimental Protocol


Experimental benchmark of five different protocols (3tfill, bpmI, internal, rnaseq and yoon) for genome-wide identification of polyadenylation sites in Saccharomyces cerevisiae and transcript quantification. RNA was extracted from WT cells grown in glucose (ypd) or galactose (ypgal) as carbon source. The same RNA was used for 3 independent library constructions (technical replicates, rep).

Repositories


GEO

GSE40110

ArrayExpress

E-GEOD-40110

ENA

SRP014843

BioProject

PRJNA172855

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Contact


Aino Inkeri Järvelin