Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 11
Release date: Aug 1 2017
Last update date: Nov 26 2018
Access: Public
Genes: ETV2, FOXH1, KDR
Computational protocol: TopHat, Subread, edgeR, GNomEx, UCSC Genome Browser, GEO
Dataset link Etv2-mediated hemangiogenic fate commitment of mesoderm

Experimental Protocol


We utilized T(Brachyury), Etv2 and Scl expression together with PDGFR-alpha and FLK1 mesodermal markers to track mesoderm differentiation. (1) We performed transcriptome analysis of different stages in the generation of Etv2-high cells. 7 samples were included. (2) We performed Clustered regularly interspaced short palindromic repeats (CRISPR)-mediated screening for genes implicated in hemangiogenic cell lineage specification, in which 4 samples were included.

Repositories


GEO

GSE85641

ENA

SRP082168

BioProject

PRJNA338984

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