Computational protocol: The role of Ca2+ in the activity of Mycobacterium tuberculosis DNA gyrase

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Protocol publication

[…] ClustalW () and MUSCLE (EMBL-EBI) (,) were used for multiple sequence alignment, PSIPRED () was used for protein secondary structure prediction and PROSITE was used for predicting structural and functional patterns (). Phyre (), BioInfoBank MetaServer () and Insight II (Accelrys) were used for molecular modelling studies. […]

Pipeline specifications

Software tools Clustal W, MUSCLE, PSIPRED, Phyre
Application Nucleotide sequence alignment
Organisms Mycobacterium tuberculosis
Diseases Tuberculosis
Chemicals Calcium, Magnesium