Computational protocol: Predicting Turns in Proteins with a Unified Model

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Protocol publication

[…] The flowchart of TurnP is shown in Figure legends.. For a query, the PSI-BLAST, SPSSMPred , and a shape string predictor were launched simultaneously. Then, five type features, PSSM, SPSSM, predicted secondary structure (PSS), predicted shape string (SSPred), and shape string profile (SSProfile), were obtained. Finally, all these features, which were combined into a vector of 43 elements for each residue in a sequence, were treated as the input into CRF for modeling and prediction, where the model was trained by Train_0925. […]

Pipeline specifications

Software tools BLASTP, SSpred
Application WGS analysis