Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 24
Release date: Apr 16 2013
Last update date: Feb 19 2015
Access: Public
Diseases: Parkinsonian Disorders
Chemicals: Triiodothyronine
Dataset link RNA sequencing analysis of abdominal adipose tissue in 7 week old juvenile broiler chickens divergently selected for abdominal fatness or leanness

Experimental Protocol


Abdominal fat mRNA profiles of fat line (FL) and lean line (LL) chickens at 7 weeks of age were generated by deep sequencing (on an Illumina HiSeq 2000 system) employing several sequencing schemes to determine depth of coverage from 1, 4, and 8 multiplexed libraries per sequencing lane. Transcriptional analysis was completed by averaging short paired-end sequence reads (101 bp) for each bird across three sequencing depths.

Repositories


GEO

GSE42980

ArrayExpress

E-GEOD-42980

ENA

SRP017597

BioProject

PRJNA184019

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Contact


Larry Cogburn
Larry Albert Cogburn