Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 26
Release date: Dec 12 2017
Last update date: Sep 12 2018
Access: Public
Dataset link RNA-sequencing analysis of Douglas-fir transcriptome responses to diesel emissions generated with CeO2 nanoparticle additive

Experimental Protocol


mRNA profiles for needles grown in the previous year from Douglas-fir seedlings; Charcoal / Purafil HEPA filtered air (Air Control) N=6; Emissions released from combustion of diesel fuel containing engineered CeO2 nanoparticle catalysts (DECe) N=7; Emissions released from combustion of diesel fuel (DE) N=7; HEPA filtered DECe (DECe Gas Phase) N=6; Illumina sequencing. Chamber conditions measured included particulate matter concentration, particle size distribution, concentrations of gas components (O2, CO, NO, NO2 and NOX), as well as temperature and relative humidity. Cerium deposition in an on needles was quantified by ICP-MS.

Repositories


GEO

GSE107902

ENA

SRP126490

BioProject

PRJNA421903

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Contact


Jay Reichman