Computational protocol: Identification of Core Alpha 1,3-Fucosyltransferase Gene From Silkworm: An Insect Popularly Used to Express Mammalian Proteins

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Protocol publication

[…] Hydrophobic cluster analysis (HCA) is a graphical protein sequence comparison method, based on the detection of hydrophobic clusters containing the amino acids Val, Ile, Leu, Phe, Met, Trp, and Tyr, which are presumed to correspond to the regular secondary structure elements constituting the hydrophobic core of globular proteins (). And its plotting was performed by a Drawhca server (provided by Ressource Parisienne en Bioinformatique Structurale, France) on the internet (http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py?form=HCA). […]

Pipeline specifications

Software tools HCA toolkit, [email protected]
Application Protein sequence analysis
Organisms Bombyx mori, Homo sapiens, Drosophila melanogaster
Diseases Hypersensitivity
Chemicals Amino Acids, Fucose, Guanosine Diphosphate