Dataset features

Specifications


Application: Hi-C analysis
Number of samples: 10
Release date: May 23 2017
Last update date: Jun 27 2018
Access: Public
Diseases: Neoplasms
Dataset link Hi-C As A New Tool For Precise Detection And Characterization Of Chromosomal Rearrangements And Copy Number Variation In Human Tumors

Experimental Protocol


Performed Hi-C on two human lymphoblastoid cell lines with known chromosomal translocations (FY1199 and DD1618) and on a transformed mouse cell line (EKLF). In addition, performed Hi-C on six human brain tumours: five glioblastomas ( GB176, GB180, GB182, GB183 and GB238) and one anaplastic astrocytoma (AA86). Hi-C was also performed in a human cell line control (GM07017). QDNAseq was performed on the AA86, GB176, GB180, GB182, GB183 and GB238 sampes.

Repositories


GEO

GSE81879

ENA

SRP075697

BioProject

PRJNA322837

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Contact


Steven Wingett

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