Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 9
Release date: Jun 14 2017
Last update date: Nov 20 2018
Access: Public
Diseases: Infertility
Dataset link Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (RNA-Seq)

Experimental Protocol


RNA-seq of globin-depleted polyA-isolated RNA libraries isolated from primary erythroid ter119+ cells obtained from the spleens of acetylphenylhydrazine treated mice. Wild-type C57BL/6 mice were comparied with mice containing deletions for HS-29 (D29) or HS-38 and HS-39 (D3839) CTCF binding sites. Biological triplicates are included for each mouse and are analysed compared to WT (C57)

Repositories


GEO

GSE97870

ENA

SRP104130

BioProject

PRJNA383118

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Contact


Jelena Telenius

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