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Protocol publication

[…] i, Ph.D.2, Frank A. Sinicrope, M.D.2, Jeff A. Sloan, Ph.D.2, Dan C. Smith, M.D.1, David I. Smith, Ph.D.2, Thomas C. Smyrk, M.D.2, Mark E. Stark, M.D.1, Nicholas Talley, M.D., Ph.D.2, Stephen N. Thibodeau, Ph.D.2, Michael D. Van Norstrand, M.D., Ph.D.2, Michael B. Wallace, M.D.1, Kenneth K. Wang, M.D.2, Richard M. Weinshilboum, M.D.2, Dennis Wigle, M.D., Ph.D.2, Herbert C. Wolfsen, M.D.1, Louis M. Wong Kee Song, M.D.2, Timothy A. Woodward, M.D.1, Tsung-The Wu, M.D., Ph.D.2, Harry H. Yoon, M.D.2, Alan R. Zinsmeister, Ph.D2., URLs , BEACON, http://beacon.tlvnet.net;, eQTL resources, http://eqtl.uchicago.edu/cgi-bin/gbrowse/eqtl;, GWASTools, http://www.bioconductor.org/packages/devel/bioc/html/GWASTools.html;, HaploReg, http://www.broadinstitute.org/mammals/haploreg;, MaCH, http://www.sph.umich.edu/csg/abecasis/mach/index.html;, METAL, http://www.sph.umich.edu/csg/abecasis/metal/index.html;, R, http://www.R-project.org;, RegulomeDB, http://www.regulomedb.org/index;, SNPRelate, http://cran.r-project.org/web/packages/SNPRelate/index.html;, The Wellcome Trust Case Control Consortium, http://www.wtccc.org.uk;, UCSC Genome Resources, httsp://genome.cse.ucsc.edu;, COMPETING FINANCIAL INTERESTS , The authors declare no competing financial interests., AUTHOR CONTRIBUTIONS , LB, NB, CC, AC, SC, WHC, DC, RF, MG, LH, NH, GL, LM, ON, PP, BR, HR, YR, NS, TV, DW, AW, WY planned the study., PP, TV, DW obtained funding., CC, RF, DL, TV, DW oversaw the study., LB, NB, IC, AC, DC, IRB, RF, MG, LH, NH, GL, LM, ON, BR, YR, NS, TV, DW, AW, WY recruited participants., PH, PLS, CS processed samples., PH, PLS, CS undertook genotyping., WE, DL, XL, SM, LO, PP, RZ analyzed dat […]

Pipeline specifications

Software tools GWASTools, HaploReg, SNPRelate
Databases RegulomeDB