Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Apr 10 2015
Last update date: May 31 2015
Access: Public
Chemicals: Amino Acids, Carbon, Cellobiose, Glucose
Computational protocol: CLC Genomics Workbench, FunSpec, SigmaPlot, GEO
Dataset link Transcriptional reprogramming of engineered cellobiose-utilizing Saccharomyces cerevisiae in response to cellobiose revealed by RNA-Seq

Experimental Protocol


mRNA levels in cellobiose-grown and glucose-grown cells of engineered cellobiose-utilizing Saccharomyces cerevisiae were examined by deep sequencing, in triplicate, using Illumina Genome Analyzer-II. We sequenced 3 samples from cellobiose-grown cells and 3 samples from glucose-grown cells and identified differential expressions in the cellobiose versus glucose fermentations by using mRNA levels of glucose-grown cells as a reference.

Repositories


GEO

GSE54825

ArrayExpress

E-GEOD-54825

ENA

SRP037533

BioProject

PRJNA237759

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Contact


Jamie Cate
Jamie H. D. Cate

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