Computational protocol: Transcriptome Analysis of the Initial Stage of Acute WSSV Infection Caused by Temperature Change

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Protocol publication

[…] Transcriptome de novo assembly is carried out by program Trinity and TIGR Gene Indices clustering tools (TGICL) . The obtained unigenes were annotated by BLASTx with the sequences available in NR database and Swiss-Prot databases (E-value<10−5). […]

Pipeline specifications

Software tools Trinity, TGICL, BLASTX
Databases UniProt
Application Transcription analysis
Organisms Shrimp white spot syndrome virus
Diseases Dental Caries, HIV Infections
Chemicals NAD, Pyruvic Acid, Citric Acid