Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 60
Release date: Jul 16 2018
Last update date: Jul 20 2018
Access: Public
Genes: STX2
Taxon: Homo sapiens
Dataset link Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli

Experimental Protocol


Comparison of 30 non-O157 STEC strains, one group of strains having caused HUS (n=15) and one causing no or mild disease (n=15), induced with mitomycin c or non-induced, at exponential growth in SILAC medium. Please note that locations of genomic features are provided in associated .gtf file for each sample pair (i.e. non-induced and induced samples; e.g. *nIND.HUS and *IND.HUS), linked to the corresponding uninduced sample records.

Repositories


GEO

GSE112430

ENA

SRP136621

BioProject

PRJNA445985

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Contact


Christina Aas