Computational protocol: Re annotation and re analysis of the Campylobacter jejuni NCTC11168 genome sequence

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Protocol publication

[…] Manual re-annotation of all previously annotated C. jejuni NCTC11168 CDSs [] was carried out based on results from BLASTP [] and FASTA [] sequence comparisons using non-redundant databases. Re-annotation was based, wherever possible, on characterised proteins or genes []. Additional functional data was provided by using the PFAM [] and PROSITE [] motif databases. New searches carried out in this re-annotation included running RFAM [] database and also the programs TMHMM [] and SIGNALP []. […]

Pipeline specifications

Software tools BLASTP, TMHMM, SignalP
Databases Pfam PROSITE Rfam
Application Membrane protein analysis
Organisms Campylobacter jejuni, Homo sapiens
Diseases Gastroenteritis