Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 46
Release date: Oct 25 2017
Last update date: May 2 2018
Access: Public
Diseases: Retinoblastoma
Computational protocol: affy, limma
Dataset link Loss of the Caenorhabditis elegans pocket protein LIN-35 reveals MuvB’s innate function as the repressor of DREAM target genes

Experimental Protocol


Examination of 7 DRM complex subunits (DPL-1, EFL-1, LIN-35, LIN-9, LIN-37, LIN-52, and LIN-54) in lin-35(n745) (a protein null strain) and WT C. elegans late stage embryos to assess effects of loss of LIN-35 on DRM complex chromatin assembly. Study includes reanalysis of GSM1195397 and GSM1195398 (GSE49204) with an additional replicate, generating the following processed data: LIN-37.SDQ3166.N2.rep0.vsInputRep0.SES.bw LIN-37.SDQ3166.N2.IDR.0.01.narrowPeak

Repositories


GEO

GSE95071

ENA

SRP100319

BioProject

PRJNA375929

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