MetaTrans specifications

Unique identifier:
OMICS_14302
Interface:
Command line interface
Input data:
A sequence paired-end file.
Output data:
An raw counts and differential expression files produced by the functional and taxonomical analyses.
Programming languages:
C, C++, Java, Perl, Python, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
1.0
Requirements:
GenomicRanges, IRanges, ShortRead, DESeq2, JRE, Python::NumPy, BioPython, USEARCH

versioning

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MetaTrans distribution

download

MetaTrans support

Documentation

Maintainer

  • Chaysavanh Manichanh <>

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Credits

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Publications

Institution(s)

Digestive Research Unit, Vall d’Hebron Research Institute, Barcelona, Spain; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; CIBERehd, Instituto de Salud Carlos III, Madrid, Spain

Funding source(s)

This study was supported by grants from the Instituto de Salud Carlos III/FEDER [CP13/00181, PI14/00764].

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