Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 30
Release date: Jun 1 2016
Last update date: Mar 7 2018
Access: Public
Chemicals: Hydrocortisone
Computational protocol: FastQC, Trimmomatic, TopHat, HTSeq, RSEM, Bowtie, edgeR, GEO
Dataset link Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation [adults]

Experimental Protocol


30 samples total were analyzed. 9 caudal fins samples (0, 2 and 4dpa), 3 blood samples and 3 muscle samples from adults exposed to DMSO control as embryos. 9 caudal fins samples (0, 2 and 4dpa), 3 blood samples and 3 muscle samples from adults exposed to cortisol (1 micromolar) as embryos.

Repositories


GEO

GSE80260

ArrayExpress

E-GEOD-80260

ENA

SRP073272

BioProject

PRJNA318414

Download


Contact


Benjamin King
Benjamin L King

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