Computational protocol: A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein

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Protocol publication

[…] SmURFP homology model was created using Swiss-Model Server with P. yezoensis APCα crystal structure (1KN1.pdb and sequence in ). The homodimeric interface was identified using PatchDock and subsequently FireDock. The lowest free energy structure is shown in . Protein sequence alignments () were created using ClustalX. All protein figures were created using UCSF Chimera package. […]

Pipeline specifications

Software tools SWISS-MODEL, PatchDock, Clustal W, UCSF Chimera
Applications Protein structure analysis, Amino acid sequence alignment
Diseases Adenomatous Polyposis Coli
Chemicals Biliverdine