Dataset features

Specifications


Dataset type: SNP genotyping by SNP array, genotyping by array, Variation
Number of samples: 159
Release date: May 30 2013
Last update date: May 23 2017
Access: Public
Diseases: Neoplasms, Leukemia, Myeloid, Acute
Dataset link Clonal evolution in relapsed NPM1 mutated acute myeloid leukemia

Experimental Protocol


Bone marrow or peripheral blood samples from diagnosis, remission and relapse of 53 NPM1 mutated AML patient were analyzed on the Affymetrix Genome-Wide Human SNP 6.0 Array. Raw data (CEL-Files) were transformed to genotyping files (CHP) with Genotyping Console Version 4.2 from Affymetrix. Bioinformatic evaluation of CNAs was performed using dChipSNP and circular binary segmentation .

Repositories


GEO

GSE46951

ArrayExpress

E-GEOD-46951

BioProject

PRJNA203255

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Contact


Jan Kroenke