Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 6
Release date: Jan 1 2016
Last update date: Jan 1 2016
Access: Public
Diseases: Yersinia Infections
Chemicals: Carbon
Dataset link Yersinia pestis uses AHL-based quorum sensing to regulate metabolic functions likely to be important for flea colonization

Experimental Protocol


Six independent RNA samples from Y. pestis CO92 R114 AHL deficient cultures were paired with six independent RNA samples from control Y. pestis CO92 R88 cultures for hybridization to six two-color microarrays. For three arrays, the control RNA sample was labeled with Alexa 555 dye and the experimental RNA sample was labeled with Alexa 647 dye; the dyes were reversed for the other three arrays to account for any dye bias.

Repositories


GEO

GSE29240

ArrayExpress

E-GEOD-29240

BioProject

PRJNA153977

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Contact


Chris Minion