Computational protocol: Genetic characterization of H5N1 influenza viruses isolated from chickens in Indonesia in 2010

Similar protocols

Protocol publication

[…] To understand the interrelationship of H5N1 viruses isolated from chickens in Indonesia, we phylogenetically analyzed the viruses we isolated in this study, together with publicly available sequence data. We used sequence data of viruses that belonged to clades 2.1.1, 2.1.2, 2.1.3, and IDN/6/05-like and were isolated in Indonesia. All sequences were assembled and edited by using BioEdit 7 software [] and a neighbor-joining (NJ) tree was constructed by using ClustalW. Estimates of the phylogenies were calculated by performing 100 NJ bootstrap replicates. […]

Pipeline specifications

Software tools BioEdit, Clustal W
Application Phylogenetics
Organisms Gallus gallus, Homo sapiens