Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 3
Release date: Jul 31 2015
Last update date: Apr 6 2016
Access: Public
Chemicals: Carbohydrates, Lactic Acid
Dataset link Comparative analysis of extremely thermophilic Caldicellulosiruptor species reveals common and differentiating cellular strategies for plant biomass utilization

Experimental Protocol


A dye swap was completed with each of three Caldicellulosiruptor species: C. bescii, C. kronotskyensis and C. saccharolyticus growing on cellulose and switchgrass. Half of the RNA sample for one condition was labeled with Cy3 and the other half Cy5. The two differentially labeled samples were run on two different slides and analyzed to investigate differences in transcription during growth on cellulose and switchgrass.

Repositories


GEO

GSE68810

ArrayExpress

E-GEOD-68810

BioProject

PRJNA283881

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