Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Sep 7 2017
Last update date: Jul 20 2018
Access: Public
Diseases: Muscular Diseases, Obesity
Computational protocol: TopHat, Cufflinks, HTSeq, GeneID, limma, DAVID
Dataset link Identification of islet-enriched long non-coding RNAs contributing to beta-cell failure in type 2 diabetes

Experimental Protocol


Performed RNA sequencing coupled with de novo annotation to search for known (protein and long non coding RNAs) and novel transcripts (lncRNAs) dysregulated in pancreatic islets of diet-induced obesity mice versus mice fed a normal diet. (C57BL/6 mice 14 weeks old at sacrifice, fed for 8 weeks)

Repositories


GEO

GSE92602

ENA

SRP095370

BioProject

PRJNA358100

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Contact


Frederic Burdet

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